Infobiotics Workbench: An In Silico Software Suite for Computational Systems Biology
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2021Peer-Reviewed
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This chapter presents the Infobiotics Workbench (IBW), an integrated software suite developed for computational systems biology. The tool is built upon stochastic P systems, a probabilistic extension of P systems, as modelling framework. The platform utilises computer-aided modelling and analysis of biological systems through simulation, verification and optimisation. IBW allows modelling and analysing not only cell level behaviour, but also multi-compartmental population dynamics. This enables comparing be tween macroscopic and mesoscopic interpretations of molecular interaction networks and investigating temporo-spatial phenomena in multicellular systems. These capabilities make IBW a useful, coherent and comprehensive in silico tool for systems biology research.Version
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Zhang G, Pérez-Jiménez MJ, Riscos-Núñez A, et al (2021) Infobiotics Workbench: An In Silico Software Suite for Computational Systems Biology. In: Zhang G, Pérez-Jiménez MJ, Riscos-Núñez A, et al. Membrane Computing Models: Implementations. Singapore: Springer. Chapter 3, pp 71-99.Link to Version of Record
https://doi.org/10.1007/978-981-16-1566-5Type
Book chapterae974a485f413a2113503eed53cd6c53
https://doi.org/10.1007/978-981-16-1566-5