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Infobiotics Workbench - A P Systems Based Tool for Systems and Synthetic Biology

Blakes, J.
; 
Twycross, J.
; 
Konur, Savas
; 
Romero-Campero, F.J.
; 
Krasnogor, N.
; 
Gheorghe, Marian
Publication Date
2014-01-01
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Keywords
Systems and synthetic biology; Membrane computing; P systems; Modelling; Verification; Simulation; Optimisation
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Peer-Reviewed
Yes
Open Access status
Accepted for publication
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Engineering and Digital Technology Publications
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Suppressed - Springer book chapter
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Abstract
This chapter gives an overview of an integrated software suite, the Infobiotics Workbench, which is based on a novel spatial discrete-stochastic P systems modelling framework. The Workbench incorporates three important features, simu- lation, model checking and optimisation. Its capability for building, analysing and optimising large spatially discrete and stochastic models of multicellular systems makes it a useful, coherent and comprehensive in silico tool in systems and synthetic biology research.
URI
http://hdl.handle.net/10454/8711
Version
Accepted Manuscript
Citation
Blakes J, Twycross J, Konur S et al (2014) Infobiotics Workbench - A P Systems Based Tool for Systems and Synthetic Biology. In: Frisco P, Gheorghe M and Pérez-Jiménez MJ (Eds) Applications of Membrane Computing in Systems and Synthetic Biology. Emergence, Complexity and Computation [series]. Springer. 7: 1-41.
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http://link.springer.com/book/10.1007/978-3-319-03191-0
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Book chapter
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The full text is unavailable due to publisher copyright restrictions on book chapters.